Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas viridiflava |
| Strain | CFBP13507 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | epilithic biofilms; Fresh water; gut; icepacks; irrigation water; lake water; litter; rain; snow; snowpack |
| Biotic relationship | Free-living |
| Host(s) | Homo sapiens, Gallus gallus, Viridiplantae |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1181068 bp
Thymine Count
1214519 bp
Guanine Count
1761031 bp
Cytosine Count
1725290 bp
Genome Length
5881917 bp
Protein-coding Genes
5114 genes
Non-Coding Genes
83 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| type b 50s ribosomal protein l31 | PviCFBP13507_07645 | Not Available | Positive | 1699017 - 1699298 | 10175.7 |
| d-alanine--d-alanine ligase | PviCFBP13507_07650 | Not Available | Positive | 1699451 - 1700545 | 39102.1 |
| dna mismatch repair protein mutt | PviCFBP13507_07655 | Not Available | Positive | 1700542 - 1700943 | 14422.5 |
| lysr family transcriptional regulator | PviCFBP13507_07660 | Not Available | Negative | 1700968 - 1701885 | 34145.5 |
| 5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase | PviCFBP13507_07665 | Not Available | Positive | 1701992 - 1702693 | 26282.4 |
| alpha/beta hydrolase | PviCFBP13507_07670 | Not Available | Positive | 1702825 - 1703817 | 35836.9 |
| disulfide bond formation protein dsba | PviCFBP13507_07675 | Not Available | Positive | 1703888 - 1704535 | 24197.3 |
| glpm family protein | PviCFBP13507_07680 | Not Available | Negative | 1704553 - 1704891 | 12256.6 |
| sigma-54-dependent fis family transcriptional regulator | PviCFBP13507_07685 | Not Available | Negative | 1704939 - 1706267 | 49023.7 |
| sensor histidine kinase | PviCFBP13507_07690 | Not Available | Negative | 1706278 - 1708194 | 70897.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Spots | Causes | PMC8659605 |
| Streaks | Causes | PMC8659605 |
| Necrosis | Causes | PMC8659605 |
| Rots | Causes | PMC8659605 |
| Kiwifruit blossom blight | Causes | PMC8659605 |
| Pith necrosis | Causes | PMC8659605 |
| Bacterial stem blight disease | Causes | PMC8659605 |
| Soft rot | Causes | PMC8659605 |
| Cankers | Causes | PMC11448091 |
| Tomato pith necrosis | Causes | PMC12847849 |
