Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas viridiflava |
| Strain | CFBP13507 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | epilithic biofilms; Fresh water; gut; icepacks; irrigation water; lake water; litter; rain; snow; snowpack |
| Biotic relationship | Free-living |
| Host(s) | Homo sapiens, Gallus gallus, Viridiplantae |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1181068 bp
Thymine Count
1214519 bp
Guanine Count
1761031 bp
Cytosine Count
1725290 bp
Genome Length
5881917 bp
Protein-coding Genes
5114 genes
Non-Coding Genes
83 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| short-chain dehydrogenase | PviCFBP13507_07545 | Not Available | Positive | 1676332 - 1677093 | 26565.9 |
| sdr family nad(p)-dependent oxidoreductase | PviCFBP13507_07550 | Not Available | Positive | 1677479 - 1678228 | 25831.3 |
| hypothetical protein | PviCFBP13507_07555 | Not Available | Positive | 1678251 - 1678550 | 11118.6 |
| cobalamin biosynthesis protein cobw | PviCFBP13507_07560 | Not Available | Positive | 1678547 - 1679566 | 36929.8 |
| signal peptide prediction | PviCFBP13507_07565 | Not Available | Positive | 1679563 - 1680759 | 44525.8 |
| membrane-bound pqq-dependent dehydrogenase, glucose/quinate/shikimate family | PviCFBP13507_07570 | Not Available | Negative | 1681024 - 1683450 | 86893.8 |
| porin | PviCFBP13507_07575 | Not Available | Negative | 1683577 - 1684950 | 50631.9 |
| duf2132 domain-containing protein | PviCFBP13507_07580 | Not Available | Positive | 1685253 - 1685480 | 8712.5 |
| hypothetical protein | PviCFBP13507_07585 | Not Available | Positive | 1685523 - 1686182 | 24908.2 |
| siderophore-interacting protein | PviCFBP13507_07590 | Not Available | Negative | 1686234 - 1687016 | 29285.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Spots | Causes | PMC8659605 |
| Streaks | Causes | PMC8659605 |
| Necrosis | Causes | PMC8659605 |
| Rots | Causes | PMC8659605 |
| Kiwifruit blossom blight | Causes | PMC8659605 |
| Pith necrosis | Causes | PMC8659605 |
| Bacterial stem blight disease | Causes | PMC8659605 |
| Soft rot | Causes | PMC8659605 |
| Cankers | Causes | PMC11448091 |
| Tomato pith necrosis | Causes | PMC12847849 |
