Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas viridiflava |
| Strain | CFBP13507 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | epilithic biofilms; Fresh water; gut; icepacks; irrigation water; lake water; litter; rain; snow; snowpack |
| Biotic relationship | Free-living |
| Host(s) | Homo sapiens, Gallus gallus, Viridiplantae |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1181068 bp
Thymine Count
1214519 bp
Guanine Count
1761031 bp
Cytosine Count
1725290 bp
Genome Length
5881917 bp
Protein-coding Genes
5114 genes
Non-Coding Genes
83 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| sensor histidine kinase | PviCFBP13507_07395 | Not Available | Positive | 1644878 - 1646269 | 50890.2 |
| hdod domain-containing protein | PviCFBP13507_07400 | Not Available | Negative | 1646263 - 1647084 | 30439.9 |
| folate-binding protein ygfz | PviCFBP13507_07405 | Not Available | Negative | 1647193 - 1648140 | 34271.9 |
| succinate dehydrogenase assembly factor 2 family protein | PviCFBP13507_07410 | Not Available | Positive | 1648284 - 1648538 | 10354.6 |
| hypothetical protein | PviCFBP13507_07415 | Not Available | Positive | 1648522 - 1648986 | 17375.3 |
| l-aspartate oxidase | PviCFBP13507_07420 | Not Available | Negative | 1648955 - 1650571 | 59824.0 |
| rna polymerase sigma factor rpoe | PviCFBP13507_07425 | Not Available | Positive | 1651061 - 1651642 | 22252.3 |
| rna polymerase subunit sigma | PviCFBP13507_07430 | Not Available | Positive | 1651676 - 1652269 | 20994.9 |
| rna polymerase subunit sigma | PviCFBP13507_07435 | Not Available | Positive | 1652278 - 1653234 | 34547.2 |
| degq family serine endoprotease | PviCFBP13507_07440 | Not Available | Positive | 1653520 - 1654953 | 50211.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Spots | Causes | PMC8659605 |
| Streaks | Causes | PMC8659605 |
| Necrosis | Causes | PMC8659605 |
| Rots | Causes | PMC8659605 |
| Kiwifruit blossom blight | Causes | PMC8659605 |
| Pith necrosis | Causes | PMC8659605 |
| Bacterial stem blight disease | Causes | PMC8659605 |
| Soft rot | Causes | PMC8659605 |
| Cankers | Causes | PMC11448091 |
| Tomato pith necrosis | Causes | PMC12847849 |
