Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas viridiflava |
| Strain | CFBP13507 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | epilithic biofilms; Fresh water; gut; icepacks; irrigation water; lake water; litter; rain; snow; snowpack |
| Biotic relationship | Free-living |
| Host(s) | Homo sapiens, Gallus gallus, Viridiplantae |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1181068 bp
Thymine Count
1214519 bp
Guanine Count
1761031 bp
Cytosine Count
1725290 bp
Genome Length
5881917 bp
Protein-coding Genes
5114 genes
Non-Coding Genes
83 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| outer membrane porin, oprd family | PviCFBP13507_05330 | Not Available | Negative | 1209439 - 1210779 | 48092.4 |
| hit domain-containing protein | PviCFBP13507_05335 | Not Available | Positive | 1211748 - 1212173 | 16195.4 |
| hypothetical protein | PviCFBP13507_05340 | Not Available | Positive | 1212176 - 1212382 | 8080.52 |
| cold-shock protein | PviCFBP13507_05345 | Not Available | Negative | 1212442 - 1212663 | 8252.79 |
| dna starvation/stationary phase protection protein | PviCFBP13507_05355 | Not Available | Positive | 1213507 - 1213980 | 17788.3 |
| hypothetical protein | PviCFBP13507_05360 | Not Available | Positive | 1214394 - 1214651 | 9419.46 |
| aspartate--trna ligase | PviCFBP13507_05365 | Not Available | Positive | 1214941 - 1216716 | 66386.6 |
| yebc/pmpr family dna-binding transcriptional regulator | PviCFBP13507_05370 | Not Available | Positive | 1216830 - 1217576 | 26571.1 |
| crossover junction endodeoxyribonuclease ruvc | PviCFBP13507_05375 | Not Available | Positive | 1217705 - 1218229 | 18504.7 |
| holliday junction branch migration protein ruva | PviCFBP13507_05380 | Not Available | Positive | 1218336 - 1218944 | 22184.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Spots | Causes | PMC8659605 |
| Streaks | Causes | PMC8659605 |
| Necrosis | Causes | PMC8659605 |
| Rots | Causes | PMC8659605 |
| Kiwifruit blossom blight | Causes | PMC8659605 |
| Pith necrosis | Causes | PMC8659605 |
| Bacterial stem blight disease | Causes | PMC8659605 |
| Soft rot | Causes | PMC8659605 |
| Cankers | Causes | PMC11448091 |
| Tomato pith necrosis | Causes | PMC12847849 |
