Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas viridiflava |
| Strain | CFBP13507 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | epilithic biofilms; Fresh water; gut; icepacks; irrigation water; lake water; litter; rain; snow; snowpack |
| Biotic relationship | Free-living |
| Host(s) | Homo sapiens, Gallus gallus, Viridiplantae |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1181068 bp
Thymine Count
1214519 bp
Guanine Count
1761031 bp
Cytosine Count
1725290 bp
Genome Length
5881917 bp
Protein-coding Genes
5114 genes
Non-Coding Genes
83 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| protein-l-isoaspartate(d-aspartate) o-methyltransferase | PviCFBP13507_05180 | Not Available | Positive | 1178364 - 1179041 | 25091.6 |
| lysm peptidoglycan-binding domain-containing protein | PviCFBP13507_05185 | Not Available | Positive | 1179246 - 1180112 | 30467.4 |
| rna polymerase sigma factor rpos | PviCFBP13507_05190 | Not Available | Positive | 1180215 - 1181225 | 38311.8 |
| ferredoxin family protein | PviCFBP13507_05195 | Not Available | Negative | 1181760 - 1182083 | 11950.1 |
| dna mismatch repair protein muts | PviCFBP13507_05200 | Not Available | Negative | 1182329 - 1184908 | 95623.0 |
| cina family protein | PviCFBP13507_05205 | Not Available | Positive | 1185381 - 1185881 | 17256.4 |
| recombinase reca | PviCFBP13507_05210 | Not Available | Positive | 1185975 - 1187039 | 37670.4 |
| recombination regulator recx | PviCFBP13507_05215 | Not Available | Positive | 1187045 - 1187512 | 17935.5 |
| tigr00730 family rossman fold protein | PviCFBP13507_05220 | Not Available | Negative | 1187515 - 1188633 | 41922.0 |
| hypothetical protein | PviCFBP13507_05225 | Not Available | Negative | 1188980 - 1189396 | 15243.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Spots | Causes | PMC8659605 |
| Streaks | Causes | PMC8659605 |
| Necrosis | Causes | PMC8659605 |
| Rots | Causes | PMC8659605 |
| Kiwifruit blossom blight | Causes | PMC8659605 |
| Pith necrosis | Causes | PMC8659605 |
| Bacterial stem blight disease | Causes | PMC8659605 |
| Soft rot | Causes | PMC8659605 |
| Cankers | Causes | PMC11448091 |
| Tomato pith necrosis | Causes | PMC12847849 |
