Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas viridiflava |
| Strain | CFBP13507 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | epilithic biofilms; Fresh water; gut; icepacks; irrigation water; lake water; litter; rain; snow; snowpack |
| Biotic relationship | Free-living |
| Host(s) | Homo sapiens, Gallus gallus, Viridiplantae |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1181068 bp
Thymine Count
1214519 bp
Guanine Count
1761031 bp
Cytosine Count
1725290 bp
Genome Length
5881917 bp
Protein-coding Genes
5114 genes
Non-Coding Genes
83 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| succinyl-diaminopimelate desuccinylase | PviCFBP13507_04980 | Not Available | Negative | 1134890 - 1136041 | 41053.6 |
| trna cyclic n6-threonylcarbamoyladenosine(37) synthase tcda | PviCFBP13507_04985 | Not Available | Positive | 1136229 - 1137059 | 29762.8 |
| sufe family protein | PviCFBP13507_04990 | Not Available | Negative | 1137050 - 1137457 | 15081.9 |
| cysteine desulfurase csda | PviCFBP13507_04995 | Not Available | Negative | 1137454 - 1138659 | 43286.7 |
| 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate n-succinyltransferase | PviCFBP13507_05000 | Not Available | Negative | 1138719 - 1139753 | 36192.4 |
| arsc family reductase | PviCFBP13507_05005 | Not Available | Negative | 1139801 - 1140148 | 13243.8 |
| hypothetical protein | PviCFBP13507_05010 | Not Available | Positive | 1140363 - 1140593 | 9036.8 |
| zinc-dependent metalloprotease | PviCFBP13507_05015 | Not Available | Negative | 1140667 - 1141494 | 31210.6 |
| succinyldiaminopimelate transaminase | PviCFBP13507_05020 | Not Available | Negative | 1141628 - 1142821 | 43919.6 |
| [protein-pii] uridylyltransferase | PviCFBP13507_05025 | Not Available | Negative | 1142853 - 1145552 | 102852.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Spots | Causes | PMC8659605 |
| Streaks | Causes | PMC8659605 |
| Necrosis | Causes | PMC8659605 |
| Rots | Causes | PMC8659605 |
| Kiwifruit blossom blight | Causes | PMC8659605 |
| Pith necrosis | Causes | PMC8659605 |
| Bacterial stem blight disease | Causes | PMC8659605 |
| Soft rot | Causes | PMC8659605 |
| Cankers | Causes | PMC11448091 |
| Tomato pith necrosis | Causes | PMC12847849 |
