Clavibacter michiganensis subsp. insidiosus str. R1-1

Gram-positiveRodNon-motileAerobe

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Micrococcales

Family

Microbacteriaceae

Genus

Clavibacter

Description

Clavibacter michiganensis subsp. insidiosus str. R1-1 is a Gram-positive, rod-shaped bacterium that typically arranges itself in pairs or as single cells. This microbe exhibits an aerobic metabolism, requiring oxygen for its growth and survival. Optimal growth conditions for strain R1-1 are observed at a temperature of 25.0°C, suggesting a preference for moderate environmental temperatures. The habitat of C. michiganensis subsp. insidiosus str. R1-1 is noted to be diverse, indicating its adaptability to various ecological niches. This adaptability may play a significant role in its interactions within microbial communities and its potential influence on plant health or soil ecosystems. Understanding the ecological roles of this bacterium could provide insights into its contributions to nutrient cycling or its interactions with other microbial species in its habitat. Further investigation into its specific ecological functions is warranted to elucidate its potential impacts on the environment.

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderMicrococcales
FamilyMicrobacteriaceae
GenusClavibacter
SpeciesClavibacter michiganensis
Strainsubsp. insidiosus R1-1

Profile

Physiology
Gram staining propertiesPositive
ShapeRod
MobilityNo
Flagellar presenceYes
Number of membranes1
Image of Clavibacter michiganensis subsp. insidiosus str. R1-1
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAerobe
Optimal temperature25
Temperature rangeMesophilic
HabitatMultiple
Biotic relationshipFree living
Host(s)Medicago sativa
Cell arrangementPairs - Singles
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Clavibacter michiganensis subsp. insidiosus strain R1-1 plasmid

Gene Summary

Adenine Count

7938 bp

Thymine Count

7426 bp

Guanine Count

15813 bp

Cytosine Count

16513 bp

Genome Length

47690 bp

Protein-coding Genes

48 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

4

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
hypothetical proteinVO01_RS00885Not AvailablePositive179417 - 1796569097.43
alternative ribosome rescue aminoacyl-trna hydrolase arfbVO01_RS00890Not AvailablePositive179702 - 18012415440.5
llm class flavin-dependent oxidoreductaseVO01_RS00895Not AvailableNegative180152 - 18120137759.5
duf2200 domain-containing proteinVO01_RS00900Not AvailablePositive181329 - 18167313067.8
duf2283 domain-containing proteinVO01_RS00905Not AvailableNegative181670 - 1818977554.99
tetr/acrr family transcriptional regulatorVO01_RS00910Not AvailableNegative181897 - 18247220892.9
zinc-binding alcohol dehydrogenase family proteinVO01_RS00915Not AvailablePositive182569 - 18370239163.4
rhodanese-like domain-containing proteinVO01_RS00920Not AvailablePositive183749 - 18404810251.9
ydei/ompd-associated family proteinVO01_RS00925Not AvailablePositive184089 - 18467321179.9
gnat family n-acetyltransferaseVO01_RS00930Not AvailableNegative184683 - 18526121629.7

Displaying genes 291 – 300 of 3331 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.