Porphyromonas circumdentaria

Rodanaerobic

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Bacteroidia

Order

Bacteroidales

Family

Porphyromonadaceae

Genus

Porphyromonas

Description

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassBacteroidia
OrderBacteroidales
FamilyPorphyromonadaceae
GenusPorphyromonas
SpeciesPorphyromonas circumdentaria
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsanaerobic
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatoral cavity
Biotic relationshipNot Available
Host(s)Felis catus
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Porphyromonas circumdentaria strain ATCC 51356 genome assembly,

Gene Summary

Adenine Count

583172 bp

Thymine Count

573286 bp

Guanine Count

433714 bp

Cytosine Count

440372 bp

Genome Length

2033794 bp

Protein-coding Genes

1691 genes

Non-Coding Genes

50 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
udp-n-acetylglucosamine-n- acetylmuramylpentapeptide n-acetylglucosamine transferaseSAMN02745171_00280Not AvailablePositive326642 - 32777541386.7
udp-n-acetylmuramate--l-alanine ligaseSAMN02745171_00281Not AvailablePositive327772 - 32916952011.3
hypothetical proteinSAMN02745171_00282Not AvailablePositive329166 - 32995430498.1
hypothetical proteinSAMN02745171_00283Not AvailablePositive330012 - 33057820658.8
d-alanyl-d-alanine carboxypeptidase / d-alanyl-d-alanine-endopeptidase (penicillin-binding protein 4)SAMN02745171_00284Not AvailablePositive330654 - 33213855918.5
pepsy-associated tm regionSAMN02745171_00285Not AvailablePositive332157 - 33367757085.9
hypothetical proteinSAMN02745171_00286Not AvailablePositive333689 - 33508951621.3
transporter, cpa2 familySAMN02745171_00287Not AvailablePositive335531 - 33779883448.9
l,d-transpeptidase catalytic domainSAMN02745171_00288Not AvailablePositive337830 - 33885839788.0
rhodanese-related sulfurtransferaseSAMN02745171_00289Not AvailablePositive338942 - 33933114662.2

Displaying genes 281 – 290 of 1741 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

17 records
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Mass search
Result columns

Structure search compares stored SMILES, InChI, and InChIKey text. Exact mass must match the stored database value.

Clear
Metabolite IDMetabolite nameStructureCAS number
Average massMonoisotopic mass
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00008763-hydroxypyruvateC3H3O4Chemical structure of 3-hydroxypyruvateNot available
Average103.054Da
Monoisotopic103.003682157Da
BASm0001167triphosphateO10P3Chemical structure of triphosphate14127-68-5
Average252.9153Da
Monoisotopic252.8704308Da
BASm00011795-hydroxyisourateC5H4N4O4Chemical structure of 5-hydroxyisourateNot available
Average184.1097Da
Monoisotopic184.0232546Da
BASm0001845nicotinateC6H4NO2Chemical structure of nicotinateNot available
Average122.1015Da
Monoisotopic122.0242034Da
BASm0001865diphosphateHO7P2Chemical structure of diphosphateNot available
Average174.95Da
Monoisotopic174.9213971Da
BASm0002002glyoxylateC2HO3Chemical structure of glyoxylateNot available
Average73.0275Da
Monoisotopic72.9925689Da
BASm0002131(3S)-hydroxy-3-methylglutaryl-CoAC27H39N7O20P3SChemical structure of (3S)-hydroxy-3-methylglutaryl-CoANot available
Average906.62Da
Monoisotopic906.1183419Da
BASm00026073-methyl-(2E)-butenoyl-CoAC26H38N7O17P3SChemical structure of 3-methyl-(2E)-butenoyl-CoANot available
Average845.61Da
Monoisotopic845.1279693Da
BASm00026093-methyl-(2E)-glutaconyl-CoAC27H37N7O19P3SChemical structure of 3-methyl-(2E)-glutaconyl-CoANot available
Average888.61Da
Monoisotopic888.1105221Da

Displaying 1–10 of 17 metabolites

Health Effects

No health effects information available for this bacterium.