Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Hyphomicrobiales
Family
Rhizobiaceae
Genus
Agrobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Hyphomicrobiales |
| Family | Rhizobiaceae |
| Genus | Agrobacterium |
| Species | Agrobacterium rubi |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Equus caballus, Rubus sp. |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1183097 bp
Thymine Count
1172902 bp
Guanine Count
1576030 bp
Cytosine Count
1577043 bp
Genome Length
5510033 bp
Protein-coding Genes
5005 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| d-ala-d-ala transporter subunit | A6U92_20775 | Not Available | Negative | 5437620 - 5438552 | 33150.3 |
| peptide abc transporter permease | A6U92_20780 | Not Available | Negative | 5438549 - 5439616 | 39356.9 |
| abc transporter substrate-binding protein | A6U92_20785 | Not Available | Negative | 5439635 - 5441272 | 59519.7 |
| peptidase | A6U92_20790 | Not Available | Negative | 5441310 - 5442365 | 37809.1 |
| phosphoribosyltransferase | A6U92_20795 | Not Available | Negative | 5442549 - 5443226 | 24578.9 |
| amidohydrolase | A6U92_20800 | Not Available | Positive | 5443337 - 5444509 | 41730.5 |
| adenosine deaminase | A6U92_20805 | Q7CUX4 | Negative | 5444623 - 5446416 | 63043.6 |
| nucleoside hydrolase | A6U92_20810 | Not Available | Negative | 5446391 - 5447341 | 33358.1 |
| abc transporter atp-binding protein | A6U92_20815 | Q2YKX3 | Negative | 5447344 - 5448369 | 36267.1 |
| spermidine/putrescine abc transporter atp-binding protein | A6U92_20820 | Not Available | Negative | 5448362 - 5449141 | 27870.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Crown and cane gall symptoms | Causes | PMC12602688 |
| Crown and cane galls | Causes | PMC12602688 |
