Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Hyphomicrobiales
Family
Rhizobiaceae
Genus
Agrobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Hyphomicrobiales |
| Family | Rhizobiaceae |
| Genus | Agrobacterium |
| Species | Agrobacterium rubi |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Equus caballus, Rubus sp. |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1183097 bp
Thymine Count
1172902 bp
Guanine Count
1576030 bp
Cytosine Count
1577043 bp
Genome Length
5510033 bp
Protein-coding Genes
5005 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| amino acid abc transporter substrate-binding protein | A6U92_20225 | Not Available | Positive | 5315979 - 5316854 | 31035.2 |
| fe3+-hydroxamate abc transporter permease fhub | A6U92_20230 | Not Available | Positive | 5316838 - 5318835 | 67819.5 |
| hypothetical protein | A6U92_20235 | Not Available | Negative | 5318904 - 5319146 | 9216.02 |
| Trna-val | Not Available | Not Available | Positive | 5319331 - 5319405 | Not Available |
| mfs transporter | A6U92_20245 | Q2YIF7 | Negative | 5319488 - 5319850 | 13412.3 |
| n-formylglutamate amidohydrolase | A6U92_20250 | Not Available | Positive | 5320033 - 5320917 | 32874.3 |
| histidinol-phosphatase | A6U92_20255 | Q6NPM8 | Positive | 5321246 - 5322022 | 27852.0 |
| glycosyl transferase family 1 | A6U92_20260 | Not Available | Negative | 5322416 - 5324176 | 64822.1 |
| imp dehydrogenase | A6U92_20265 | Not Available | Positive | 5324437 - 5327766 | 123852.0 |
| hypothetical protein | A6U92_20270 | P9WL97 | Positive | 5327817 - 5330180 | 87611.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Crown and cane gall symptoms | Causes | PMC12602688 |
| Crown and cane galls | Causes | PMC12602688 |
