Agrobacterium rubi

Gram-negativeRod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Rhizobiaceae

Genus

Agrobacterium

Description

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyRhizobiaceae
GenusAgrobacterium
SpeciesAgrobacterium rubi
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Agrobacterium rubi
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Homo sapiens, Equus caballus, Rubus sp.
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Agrobacterium rubi strain W2/73 AS1A6_9, whole genome shotgun

Gene Summary

Adenine Count

1183097 bp

Thymine Count

1172902 bp

Guanine Count

1576030 bp

Cytosine Count

1577043 bp

Genome Length

5510033 bp

Protein-coding Genes

5005 genes

Non-Coding Genes

66 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
thymidylate synthaseA6U92_02255Q8UDS3Negative476875 - 47766929823.7
hypothetical proteinA6U92_02260Not AvailableNegative477757 - 47806511070.2
Tmrna,resume consensus sequence (at 208): tgtagttgcaaatgacaaNot AvailableNot AvailablePositive478211 - 478557Not Available
hypothetical proteinA6U92_02270Not AvailablePositive478682 - 47918818840.3
hypothetical proteinA6U92_02275Not AvailablePositive479218 - 4794187476.78
gnat family acetyltransferaseA6U92_02280Q9HX72Negative479461 - 48001820967.3
phosphoserine phosphatase serbA6U92_02285O28142Negative480015 - 48090531238.8
trna (adenosine(37)-n6)-dimethylallyltransferase miaaA6U92_02290P0A3Q5Positive480904 - 48180032700.3
atpaseA6U92_02295Q8U1P0Negative481815 - 48371669836.4
acetolactate synthase 3 large subunitA6U92_02300P00893Positive484110 - 48590365371.6

Displaying genes 471 – 480 of 5071 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

300 records
Export CSV
Compound search
Mass search
Result columns

Structure search compares stored SMILES, InChI, and InChIKey text. Exact mass must match the stored database value.

Clear
Metabolite IDMetabolite nameStructureCAS number
Average massMonoisotopic mass
BASm0000047sophoroseC12H22O11Chemical structure of sophoroseNot available
Average342.297Da
Monoisotopic342.116211528Da
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002543-hydroxy-2-methylpropanoateC4H7O3Chemical structure of 3-hydroxy-2-methylpropanoateNot available
Average103.098Da
Monoisotopic103.0400677Da
BASm00002583-(carbamoylamino)propanoateC4H7N2O3Chemical structure of 3-(carbamoylamino)propanoateNot available
Average131.112Da
Monoisotopic131.046215673Da
BASm0000315acetylpyruvateC5H6O4Chemical structure of acetylpyruvateNot available
Average130.099Da
Monoisotopic130.0266087Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000399(S)-allantoinC4H6N4O3Chemical structure of (S)-allantoin97-59-6
Average158.1154Da
Monoisotopic158.0439901Da
BASm0000401(S)-2-succinylamino-6-oxoheptanedioateC11H12NO8Chemical structure of (S)-2-succinylamino-6-oxoheptanedioateNot available
Average286.218Da
Monoisotopic286.0579371Da

Displaying 1–10 of 300 metabolites

Health Effects

Health ConditionRelationReference
Crown and cane gall symptomsCausesPMC12602688
Crown and cane gallsCausesPMC12602688

Displaying health effects 1 – 2 of 2 in total