Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Hyphomicrobiales
Family
Rhizobiaceae
Genus
Agrobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Hyphomicrobiales |
| Family | Rhizobiaceae |
| Genus | Agrobacterium |
| Species | Agrobacterium rubi |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Equus caballus, Rubus sp. |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1183097 bp
Thymine Count
1172902 bp
Guanine Count
1576030 bp
Cytosine Count
1577043 bp
Genome Length
5510033 bp
Protein-coding Genes
5005 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 5s ribosomal rna | Not Available | Not Available | Positive | 21 - 135 | Not Available |
| 23s ribosomal rna | Not Available | Not Available | Positive | 108 - 2921 | Not Available |
| fad-binding dehydrogenase | A6U92_00005 | Q7D9A2 | Positive | 2501 - 4147 | 58986.5 |
| 16s ribosomal rna | Not Available | Not Available | Positive | 4136 - 5627 | Not Available |
| abc transporter | A6U92_00010 | Q0WML0 | Negative | 4144 - 5955 | 64104.2 |
| hypothetical protein | A6U92_00015 | Not Available | Positive | 5969 - 6217 | 9456.72 |
| 50s ribosomal protein l31 | A6U92_00020 | B3PZ23 | Positive | 6207 - 6428 | 8196.73 |
| regulator of ctra degradation | A6U92_00025 | Not Available | Negative | 6565 - 7080 | 19175.8 |
| hypothetical protein | A6U92_00030 | Not Available | Negative | 7433 - 7627 | 7154.48 |
| mfs transporter | A6U92_00035 | Not Available | Negative | 7624 - 8898 | 44603.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Crown and cane gall symptoms | Causes | PMC12602688 |
| Crown and cane galls | Causes | PMC12602688 |
