Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Burkholderiaceae
Genus
Trinickia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Burkholderiaceae |
| Genus | Trinickia |
| Species | Trinickia caryophylli |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Viridiplantae, Allium cepa, Dianthus caryophyllus |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1147290 bp
Thymine Count
1160892 bp
Guanine Count
2143000 bp
Cytosine Count
2092206 bp
Genome Length
6543652 bp
Protein-coding Genes
5797 genes
Non-Coding Genes
53 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | SAMN06295900_1291 | Not Available | Positive | 6454467 - 6454661 | 6930.38 |
| component of the tol biopolymer transport system | SAMN06295900_1292 | Not Available | Positive | 6454680 - 6456590 | 69098.1 |
| peroxiredoxin | SAMN06295900_1293 | Not Available | Negative | 6456688 - 6457242 | 20051.9 |
| hypothetical protein | SAMN06295900_1294 | Not Available | Negative | 6457851 - 6458126 | 8841.29 |
| diguanylate cyclase | SAMN06295900_1295 | Not Available | Negative | 6458358 - 6460142 | 64531.9 |
| putative spermidine/putrescine transport system substrate-binding protein | SAMN06295900_1296 | Not Available | Negative | 6460139 - 6461272 | 42725.0 |
| transcriptional regulator, lysr family | SAMN06295900_1297 | Not Available | Positive | 6461473 - 6462381 | 33773.6 |
| transcriptional regulator, winged helix family | SAMN06295900_1298 | Not Available | Negative | 6462365 - 6463969 | 57466.4 |
| cytochrome c, mono-and diheme variants | SAMN06295900_1299 | Not Available | Positive | 6464507 - 6465814 | 46336.2 |
| aerobic-type carbon monoxide dehydrogenase, small subunit, coxs/cuts family | SAMN06295900_12910 | Not Available | Positive | 6465811 - 6466311 | 17961.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.