Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Burkholderiaceae
Genus
Trinickia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Burkholderiaceae |
| Genus | Trinickia |
| Species | Trinickia caryophylli |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Viridiplantae, Allium cepa, Dianthus caryophyllus |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1147290 bp
Thymine Count
1160892 bp
Guanine Count
2143000 bp
Cytosine Count
2092206 bp
Genome Length
6543652 bp
Protein-coding Genes
5797 genes
Non-Coding Genes
53 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| uncharacterized conserved protein yaeq, suppresses rfah defect | SAMN06295900_12710 | Not Available | Positive | 6413974 - 6414528 | 20231.1 |
| glyoxylase i family protein | SAMN06295900_12711 | Not Available | Negative | 6414598 - 6415029 | 15663.8 |
| arac family transcriptional regulator, regulatory protein of adaptative response / methylated-dna-[protein]-cysteine methyltransferase | SAMN06295900_12712 | Not Available | Positive | 6415397 - 6416557 | 41804.4 |
| dna-3-methyladenine glycosylase ii | SAMN06295900_12713 | Not Available | Positive | 6416554 - 6417480 | 33070.8 |
| glutamate-cysteine ligase | SAMN06295900_12714 | Not Available | Positive | 6417652 - 6419268 | 59382.9 |
| hypothetical protein | SAMN06295900_12715 | Not Available | Positive | 6419444 - 6419872 | 14745.4 |
| mfs transporter, dha2 family, multidrug resistance protein | SAMN06295900_12716 | Not Available | Negative | 6419901 - 6421475 | 55824.6 |
| efflux transporter, outer membrane factor (omf) lipoprotein, nodt family | SAMN06295900_12717 | Not Available | Positive | 6421717 - 6423204 | 51789.8 |
| type ii secretion system protein n (gspn) | SAMN06295900_12718 | Not Available | Negative | 6423350 - 6424129 | 27128.2 |
| general secretion pathway protein m | SAMN06295900_12719 | Not Available | Negative | 6424173 - 6424691 | 18274.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.