Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Burkholderiaceae
Genus
Trinickia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Burkholderiaceae |
| Genus | Trinickia |
| Species | Trinickia caryophylli |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Viridiplantae, Allium cepa, Dianthus caryophyllus |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1147290 bp
Thymine Count
1160892 bp
Guanine Count
2143000 bp
Cytosine Count
2092206 bp
Genome Length
6543652 bp
Protein-coding Genes
5797 genes
Non-Coding Genes
53 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| protocatechuate 3,4-dioxygenase, beta subunit | SAMN06295900_101562 | Not Available | Positive | 604790 - 605542 | 28047.2 |
| protocatechuate 3,4-dioxygenase, alpha subunit | SAMN06295900_101563 | Not Available | Positive | 605542 - 606189 | 23734.8 |
| transcriptional regulator, lysr family | SAMN06295900_101564 | Not Available | Negative | 606120 - 607151 | 38435.7 |
| p-hydroxybenzoate 3-monooxygenase | SAMN06295900_101565 | Not Available | Positive | 607277 - 608455 | 44003.4 |
| Trna-thr | Not Available | Not Available | Positive | 608567 - 608642 | Not Available |
| d-fructose 1,6-bisphosphatase | SAMN06295900_101567 | Not Available | Negative | 608697 - 609713 | 37678.8 |
| addiction module antidote protein, higa family | SAMN06295900_101568 | Not Available | Negative | 609750 - 610175 | 15256.4 |
| proteic killer suppression protein | SAMN06295900_101569 | Not Available | Negative | 610187 - 610474 | 10798.0 |
| alanyl aminopeptidase. metallo peptidase. merops family m01 | SAMN06295900_101570 | Not Available | Negative | 610647 - 613325 | 99274.3 |
| protein of unknown function | SAMN06295900_101571 | Not Available | Positive | 613515 - 614216 | 25178.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.