Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Burkholderiaceae
Genus
Trinickia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Burkholderiaceae |
| Genus | Trinickia |
| Species | Trinickia caryophylli |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Viridiplantae, Allium cepa, Dianthus caryophyllus |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1147290 bp
Thymine Count
1160892 bp
Guanine Count
2143000 bp
Cytosine Count
2092206 bp
Genome Length
6543652 bp
Protein-coding Genes
5797 genes
Non-Coding Genes
53 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| polyisoprenoid-binding protein ycei | SAMN06295900_1256 | Not Available | Positive | 6342602 - 6343201 | 21731.2 |
| regulatory protein, luxr family | SAMN06295900_1257 | Not Available | Positive | 6343351 - 6344292 | 34313.7 |
| dna-binding response regulator, ompr family, contains rec and winged-helix (whth) domain | SAMN06295900_1258 | Not Available | Positive | 6344987 - 6345937 | 34550.6 |
| hypothetical protein | SAMN06295900_1259 | Not Available | Negative | 6345969 - 6348311 | 84753.8 |
| hypothetical protein | SAMN06295900_12510 | Not Available | Positive | 6349032 - 6349313 | 9361.11 |
| dienelactone hydrolase | SAMN06295900_12511 | Not Available | Negative | 6349396 - 6350049 | 22881.3 |
| glycine zipper 2tm domain-containing protein | SAMN06295900_12512 | Not Available | Positive | 6350480 - 6351187 | 23670.1 |
| nad(p)-dependent dehydrogenase, short-chain alcohol dehydrogenase family | SAMN06295900_12513 | Not Available | Negative | 6351394 - 6352179 | 27408.4 |
| nad(p)-dependent dehydrogenase, short-chain alcohol dehydrogenase family | SAMN06295900_12514 | Not Available | Positive | 6352321 - 6353328 | 35308.9 |
| nucleotide-binding universal stress protein, uspa family | SAMN06295900_12515 | Not Available | Positive | 6353462 - 6354412 | 33286.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.