Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Burkholderiaceae
Genus
Trinickia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Burkholderiaceae |
| Genus | Trinickia |
| Species | Trinickia caryophylli |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Viridiplantae, Allium cepa, Dianthus caryophyllus |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1147290 bp
Thymine Count
1160892 bp
Guanine Count
2143000 bp
Cytosine Count
2092206 bp
Genome Length
6543652 bp
Protein-coding Genes
5797 genes
Non-Coding Genes
53 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| diguanylate cyclase (ggdef) domain-containing protein | SAMN06295900_12434 | Not Available | Positive | 6328648 - 6329793 | 40294.5 |
| ammonium transporter | SAMN06295900_12435 | Not Available | Negative | 6330122 - 6331324 | 42112.4 |
| hypothetical protein | SAMN06295900_12436 | Not Available | Negative | 6331905 - 6332534 | 23066.0 |
| hypothetical protein | SAMN06295900_12437 | Not Available | Positive | 6333174 - 6333416 | 8567.17 |
| amp-binding enzyme | SAMN06295900_12438 | Not Available | Positive | 6333606 - 6335158 | 57067.0 |
| citrate synthase | SAMN06295900_1251 | Not Available | Positive | 6335159 - 6335377 | 8252.06 |
| fatty-acyl-coa synthase | SAMN06295900_1252 | Not Available | Positive | 6335550 - 6337193 | 59778.7 |
| aconitase /2-methylcitrate dehydratase (trans-methylaconitate-forming) | SAMN06295900_1253 | Not Available | Positive | 6337209 - 6339803 | 94471.9 |
| 2-methylaconitate cis-trans isomerase | SAMN06295900_1254 | Not Available | Positive | 6339889 - 6341076 | 41557.0 |
| alcohol dehydrogenase | SAMN06295900_1255 | Not Available | Negative | 6341152 - 6342315 | 40291.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.