Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Burkholderiaceae
Genus
Trinickia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Burkholderiaceae |
| Genus | Trinickia |
| Species | Trinickia caryophylli |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Viridiplantae, Allium cepa, Dianthus caryophyllus |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1147290 bp
Thymine Count
1160892 bp
Guanine Count
2143000 bp
Cytosine Count
2092206 bp
Genome Length
6543652 bp
Protein-coding Genes
5797 genes
Non-Coding Genes
53 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 4-hydroxy-tetrahydrodipicolinate synthase | SAMN06295900_12414 | Not Available | Positive | 6303091 - 6303978 | 31618.4 |
| alcohol dehydrogenase, class iv | SAMN06295900_12415 | Not Available | Positive | 6303989 - 6305158 | 41544.7 |
| 4-hydroxythreonine-4-phosphate dehydrogenase | SAMN06295900_12416 | Not Available | Positive | 6305155 - 6307524 | 82982.2 |
| solute:na+ symporter, sss family | SAMN06295900_12417 | Not Available | Positive | 6307589 - 6309013 | 50337.9 |
| predicted neuraminidase (sialidase) | SAMN06295900_12418 | Not Available | Positive | 6309063 - 6310256 | 43270.6 |
| transcriptional regulator, deor family | SAMN06295900_12419 | Not Available | Positive | 6310429 - 6311184 | 26781.0 |
| transcriptional regulator, rpir family | SAMN06295900_12420 | Not Available | Positive | 6311522 - 6312487 | 34122.0 |
| beta-aspartyl-peptidase (threonine type) | SAMN06295900_12421 | Not Available | Positive | 6312484 - 6313491 | 34202.8 |
| glutathione transport system atp-binding protein | SAMN06295900_12422 | Not Available | Positive | 6313503 - 6315404 | 68491.3 |
| glutathione transport system substrate-binding protein | SAMN06295900_12423 | Not Available | Positive | 6315519 - 6317087 | 57174.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.