Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Burkholderiaceae
Genus
Trinickia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Burkholderiaceae |
| Genus | Trinickia |
| Species | Trinickia caryophylli |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Viridiplantae, Allium cepa, Dianthus caryophyllus |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1147290 bp
Thymine Count
1160892 bp
Guanine Count
2143000 bp
Cytosine Count
2092206 bp
Genome Length
6543652 bp
Protein-coding Genes
5797 genes
Non-Coding Genes
53 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| glycerol 2-dehydrogenase (nad+) | SAMN06295900_12344 | Not Available | Negative | 6258402 - 6259505 | 39288.8 |
| hypothetical protein | SAMN06295900_12345 | Not Available | Negative | 6259520 - 6260272 | 26201.4 |
| choline dehydrogenase | SAMN06295900_12346 | Not Available | Negative | 6260336 - 6262027 | 60929.6 |
| monosaccharide abc transporter membrane protein, cut2 family | SAMN06295900_12347 | Not Available | Negative | 6262076 - 6263071 | 33548.6 |
| monosaccharide abc transporter membrane protein, cut2 family | SAMN06295900_12348 | Not Available | Negative | 6263076 - 6264014 | 31762.9 |
| monosaccharide abc transporter atp-binding protein, cut2 family | SAMN06295900_12349 | Not Available | Negative | 6264011 - 6265348 | 48591.9 |
| transposase | SAMN06295900_12350 | Not Available | Negative | 6265396 - 6266277 | 32336.0 |
| is66 orf2 like protein | SAMN06295900_12351 | Not Available | Negative | 6266311 - 6266661 | 14163.3 |
| transposase | SAMN06295900_12352 | Not Available | Negative | 6266642 - 6267121 | 16979.5 |
| integrase core domain-containing protein | SAMN06295900_12353 | Not Available | Negative | 6267177 - 6267356 | 7327.89 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.