Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Burkholderiaceae
Genus
Trinickia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Burkholderiaceae |
| Genus | Trinickia |
| Species | Trinickia caryophylli |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Viridiplantae, Allium cepa, Dianthus caryophyllus |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1147290 bp
Thymine Count
1160892 bp
Guanine Count
2143000 bp
Cytosine Count
2092206 bp
Genome Length
6543652 bp
Protein-coding Genes
5797 genes
Non-Coding Genes
53 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | SAMN06295900_101552 | Not Available | Negative | 595104 - 595373 | 10176.1 |
| cold-shock dna-binding protein family | SAMN06295900_101553 | Not Available | Positive | 595747 - 595950 | 7462.82 |
| dna polymerase-3 subunit epsilon | SAMN06295900_101554 | Not Available | Positive | 596069 - 597268 | 43805.2 |
| chorismate mutase | SAMN06295900_101555 | Not Available | Negative | 597275 - 597871 | 20790.9 |
| hypothetical protein | SAMN06295900_101556 | Not Available | Negative | 598079 - 598228 | 5356.26 |
| transcriptional regulator, lysr family | SAMN06295900_101557 | Not Available | Negative | 598467 - 599396 | 34387.9 |
| methionine synthase (b12-independent) | SAMN06295900_101558 | Not Available | Positive | 599507 - 601780 | 83789.8 |
| 4-carboxymuconolactone decarboxylase | SAMN06295900_101559 | Not Available | Negative | 601847 - 602236 | 14492.2 |
| 3-carboxy-cis,cis-muconate cycloisomerase | SAMN06295900_101560 | Not Available | Negative | 602233 - 603609 | 49148.1 |
| pca operon transcription factor pcaq | SAMN06295900_101561 | Not Available | Negative | 603713 - 604663 | 33615.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.