Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Burkholderiaceae
Genus
Trinickia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Burkholderiaceae |
| Genus | Trinickia |
| Species | Trinickia caryophylli |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Viridiplantae, Allium cepa, Dianthus caryophyllus |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1147290 bp
Thymine Count
1160892 bp
Guanine Count
2143000 bp
Cytosine Count
2092206 bp
Genome Length
6543652 bp
Protein-coding Genes
5797 genes
Non-Coding Genes
53 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| outer membrane protein (porin) | SAMN06295900_12314 | Not Available | Negative | 6228204 - 6229313 | 39104.9 |
| aspartate aminotransferase | SAMN06295900_12315 | Not Available | Negative | 6229435 - 6230643 | 43033.5 |
| lysr family transcriptional regulator, nitrogen assimilation regulatory protein | SAMN06295900_12316 | Not Available | Positive | 6230918 - 6231862 | 33864.3 |
| acetyl-coa carboxylase biotin carboxyl carrier protein | SAMN06295900_12317 | Not Available | Positive | 6231990 - 6232508 | 18006.6 |
| biotin carboxylase /acetyl-coa carboxylase carboxyltransferase subunit alpha | SAMN06295900_12318 | Not Available | Positive | 6232515 - 6233867 | 49229.1 |
| sensor histidine kinase inhibitor, kipi family | SAMN06295900_12319 | Not Available | Positive | 6233864 - 6234622 | 27223.6 |
| biotin-dependent carboxylase uncharacterized domain-containing protein | SAMN06295900_12320 | Not Available | Positive | 6234619 - 6235626 | 36037.2 |
| biotin carboxyl carrier protein | SAMN06295900_12321 | Not Available | Positive | 6235630 - 6236100 | 15983.0 |
| upf0271 protein | SAMN06295900_12322 | Not Available | Positive | 6236127 - 6236894 | 27131.9 |
| nadp-dependent 3-hydroxy acid dehydrogenase ydfg | SAMN06295900_12323 | Not Available | Positive | 6237066 - 6237824 | 27001.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.