Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Burkholderiaceae
Genus
Trinickia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Burkholderiaceae |
| Genus | Trinickia |
| Species | Trinickia caryophylli |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Viridiplantae, Allium cepa, Dianthus caryophyllus |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1147290 bp
Thymine Count
1160892 bp
Guanine Count
2143000 bp
Cytosine Count
2092206 bp
Genome Length
6543652 bp
Protein-coding Genes
5797 genes
Non-Coding Genes
53 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| l-fuconolactonase | SAMN06295900_12187 | Not Available | Negative | 6110556 - 6111389 | 30816.8 |
| altronate hydrolase | SAMN06295900_12188 | Not Available | Negative | 6111493 - 6112797 | 46116.0 |
| saf domain-containing protein | SAMN06295900_12189 | Not Available | Negative | 6112830 - 6113177 | 12367.6 |
| hypothetical protein | SAMN06295900_12190 | Not Available | Negative | 6113174 - 6113314 | 4705.5 |
| hypothetical protein | SAMN06295900_12191 | Not Available | Negative | 6113304 - 6113999 | 23960.8 |
| transcriptional regulator, iclr family | SAMN06295900_12192 | Not Available | Positive | 6114404 - 6115180 | 28394.3 |
| transcriptional regulator, tetr family | SAMN06295900_12193 | Not Available | Positive | 6115231 - 6115797 | 20941.1 |
| peroxiredoxin, ohr subfamily | SAMN06295900_12194 | Not Available | Positive | 6115930 - 6116355 | 14589.6 |
| protein of unknown function | SAMN06295900_12195 | Not Available | Negative | 6116665 - 6117015 | 11869.9 |
| transcriptional regulator, lysr family | SAMN06295900_12196 | Not Available | Positive | 6117209 - 6118147 | 34593.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.