Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Burkholderiaceae
Genus
Trinickia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Burkholderiaceae |
| Genus | Trinickia |
| Species | Trinickia caryophylli |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Viridiplantae, Allium cepa, Dianthus caryophyllus |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1147290 bp
Thymine Count
1160892 bp
Guanine Count
2143000 bp
Cytosine Count
2092206 bp
Genome Length
6543652 bp
Protein-coding Genes
5797 genes
Non-Coding Genes
53 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| tryptophan 2,3-dioxygenase holoenzyme /tryptophan 2,3-dioxygenase apoenzyme | SAMN06295900_120111 | Not Available | Positive | 5989791 - 5990660 | 33301.8 |
| fur family transcriptional regulator, zinc uptake regulator | SAMN06295900_120112 | Not Available | Positive | 5990833 - 5991309 | 17232.7 |
| zinc/manganese transport system substrate-binding protein | SAMN06295900_120113 | Not Available | Positive | 5991398 - 5992327 | 32989.6 |
| zinc/manganese transport system atp-binding protein | SAMN06295900_120114 | Not Available | Positive | 5992324 - 5993226 | 32348.0 |
| zinc/manganese transport system permease protein | SAMN06295900_120115 | Not Available | Positive | 5993174 - 5994007 | 28737.0 |
| d-arabinitol 4-dehydrogenase | SAMN06295900_120116 | Not Available | Positive | 5994259 - 5995659 | 50591.8 |
| xylulokinase | SAMN06295900_120117 | Not Available | Positive | 5995757 - 5997241 | 52784.2 |
| dna-binding transcriptional regulator lsrr, deor family | SAMN06295900_120118 | Not Available | Positive | 5997277 - 5998227 | 34161.1 |
| lysine/arginine/ornithine transport system substrate-binding protein | SAMN06295900_120119 | Not Available | Negative | 5998296 - 5999069 | 28282.8 |
| nadp-dependent 3-hydroxy acid dehydrogenase ydfg | SAMN06295900_120120 | Not Available | Negative | 5999184 - 5999927 | 26535.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.