Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Burkholderiaceae
Genus
Trinickia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Burkholderiaceae |
| Genus | Trinickia |
| Species | Trinickia caryophylli |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Viridiplantae, Allium cepa, Dianthus caryophyllus |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1147290 bp
Thymine Count
1160892 bp
Guanine Count
2143000 bp
Cytosine Count
2092206 bp
Genome Length
6543652 bp
Protein-coding Genes
5797 genes
Non-Coding Genes
53 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| pyridoxamine 5'-phosphate oxidase | SAMN06295900_120101 | Not Available | Positive | 5980783 - 5981421 | 24332.5 |
| cyclopropane-fatty-acyl-phospholipid synthase | SAMN06295900_120102 | Not Available | Positive | 5981578 - 5982792 | 45810.3 |
| uncharacterized conserved protein yece, duf72 family | SAMN06295900_120103 | Not Available | Positive | 5982828 - 5984039 | 42694.8 |
| peptide-methionine (s)-s-oxide reductase | SAMN06295900_120104 | Not Available | Negative | 5984120 - 5984671 | 20414.7 |
| nadh-fmn oxidoreductase rutf, flavin reductase (dim6/ntab) family | SAMN06295900_120105 | Not Available | Positive | 5984932 - 5985441 | 18220.7 |
| nad(p)-dependent dehydrogenase, short-chain alcohol dehydrogenase family | SAMN06295900_120106 | Not Available | Negative | 5985495 - 5986106 | 21353.7 |
| dna-binding transcriptional regulator, lysr family | SAMN06295900_120107 | Not Available | Positive | 5986216 - 5987118 | 32237.2 |
| transcriptional regulator, asnc family | SAMN06295900_120108 | Not Available | Negative | 5987115 - 5987606 | 18549.4 |
| kynurenine formamidase | SAMN06295900_120109 | Not Available | Positive | 5987738 - 5988385 | 23330.2 |
| kynureninase | SAMN06295900_120110 | Not Available | Positive | 5988479 - 5989729 | 45694.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.