Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Burkholderiaceae
Genus
Trinickia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Burkholderiaceae |
| Genus | Trinickia |
| Species | Trinickia caryophylli |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Viridiplantae, Allium cepa, Dianthus caryophyllus |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1147290 bp
Thymine Count
1160892 bp
Guanine Count
2143000 bp
Cytosine Count
2092206 bp
Genome Length
6543652 bp
Protein-coding Genes
5797 genes
Non-Coding Genes
53 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 3-deoxy-manno-octulosonate cytidylyltransferase (cmp-kdo synthetase) | SAMN06295900_12081 | Not Available | Positive | 5962077 - 5962892 | 29344.9 |
| adenylate kinase | SAMN06295900_12082 | Not Available | Positive | 5963101 - 5963763 | 24318.3 |
| nad(p)-dependent dehydrogenase, short-chain alcohol dehydrogenase family | SAMN06295900_12083 | Not Available | Positive | 5963919 - 5964677 | 25918.7 |
| regulator of sirc expression, contains transglutaminase-like and tpr domains | SAMN06295900_12084 | Not Available | Negative | 5964797 - 5965636 | 31511.6 |
| putative peptidoglycan lipid ii flippase | SAMN06295900_12085 | Not Available | Negative | 5965642 - 5967192 | 54758.3 |
| ssu ribosomal protein s20p | SAMN06295900_12086 | Not Available | Positive | 5967625 - 5967900 | 9814.96 |
| protein of unknown function | SAMN06295900_12087 | Not Available | Negative | 5968166 - 5968498 | 12377.9 |
| ornithine carbamoyltransferase | SAMN06295900_12088 | Not Available | Positive | 5968731 - 5969660 | 35264.0 |
| udp-n-acetylmuramate dehydrogenase | SAMN06295900_12089 | Not Available | Negative | 5969850 - 5970881 | 36897.0 |
| hypothetical protein | SAMN06295900_12090 | Not Available | Positive | 5971034 - 5971519 | 18013.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.