Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Burkholderiaceae
Genus
Trinickia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Burkholderiaceae |
| Genus | Trinickia |
| Species | Trinickia caryophylli |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Viridiplantae, Allium cepa, Dianthus caryophyllus |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1147290 bp
Thymine Count
1160892 bp
Guanine Count
2143000 bp
Cytosine Count
2092206 bp
Genome Length
6543652 bp
Protein-coding Genes
5797 genes
Non-Coding Genes
53 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| glucokinase /transcriptional regulator, rpir family | SAMN06295900_101502 | Not Available | Negative | 543242 - 545164 | 68048.5 |
| 6-phosphogluconolactonase | SAMN06295900_101503 | Not Available | Negative | 545142 - 545834 | 23792.4 |
| glucose-6-phosphate 1-dehydrogenase | SAMN06295900_101504 | Not Available | Negative | 545920 - 547380 | 54533.5 |
| hypothetical protein | SAMN06295900_101505 | Not Available | Positive | 547604 - 548011 | 14157.9 |
| carbohydrate abc transporter substrate-binding protein, cut1 family | SAMN06295900_101506 | Not Available | Positive | 548015 - 549265 | 44706.5 |
| carbohydrate abc transporter membrane protein 1, cut1 family | SAMN06295900_101507 | Not Available | Positive | 549378 - 550316 | 34105.1 |
| carbohydrate abc transporter membrane protein 2, cut1 family | SAMN06295900_101508 | Not Available | Positive | 550309 - 551163 | 31431.4 |
| carbohydrate abc transporter atp-binding protein, cut1 family | SAMN06295900_101509 | Not Available | Positive | 551258 - 552376 | 40917.8 |
| uncharacterized membrane protein yeih | SAMN06295900_101510 | Not Available | Negative | 552422 - 553063 | 22976.7 |
| dna-nicking endonuclease, smr domain | SAMN06295900_101511 | Not Available | Negative | 553032 - 553769 | 26637.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.