Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Burkholderiaceae
Genus
Trinickia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Burkholderiaceae |
| Genus | Trinickia |
| Species | Trinickia caryophylli |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Viridiplantae, Allium cepa, Dianthus caryophyllus |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1147290 bp
Thymine Count
1160892 bp
Guanine Count
2143000 bp
Cytosine Count
2092206 bp
Genome Length
6543652 bp
Protein-coding Genes
5797 genes
Non-Coding Genes
53 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| monosaccharide abc transporter membrane protein, cut2 family | SAMN06295900_101492 | Not Available | Positive | 532598 - 533608 | 34674.9 |
| transcriptional regulator, laci family | SAMN06295900_101493 | Not Available | Positive | 533632 - 534642 | 35813.2 |
| ribokinase | SAMN06295900_101494 | Not Available | Positive | 534684 - 535622 | 31594.8 |
| d-ribose pyranase | SAMN06295900_101495 | Not Available | Positive | 535628 - 536026 | 14254.5 |
| bacterial translation initiation factor 1 (bif-1) | SAMN06295900_101496 | Not Available | Negative | 536134 - 536400 | 10043.1 |
| riboflavin synthase alpha chain | SAMN06295900_101497 | Not Available | Negative | 536809 - 537438 | 22051.3 |
| diaminohydroxyphosphoribosylaminopyrimidine deaminase | SAMN06295900_101498 | Not Available | Negative | 537483 - 538604 | 40028.2 |
| glutamate-1-semialdehyde 2,1-aminomutase | SAMN06295900_101499 | Not Available | Negative | 538622 - 539905 | 44849.7 |
| mfs transporter, dha1 family, bicyclomycin/chloramphenicol resistance protein | SAMN06295900_101500 | Not Available | Positive | 540150 - 541379 | 42677.2 |
| outer membrane protein (porin) | SAMN06295900_101501 | Not Available | Negative | 541500 - 542681 | 41190.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.