Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Burkholderiaceae
Genus
Trinickia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Burkholderiaceae |
| Genus | Trinickia |
| Species | Trinickia caryophylli |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Viridiplantae, Allium cepa, Dianthus caryophyllus |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1147290 bp
Thymine Count
1160892 bp
Guanine Count
2143000 bp
Cytosine Count
2092206 bp
Genome Length
6543652 bp
Protein-coding Genes
5797 genes
Non-Coding Genes
53 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| phosphomannomutase | SAMN06295900_101411 | Not Available | Positive | 457237 - 458631 | 50263.0 |
| hypothetical protein | SAMN06295900_101412 | Not Available | Negative | 458683 - 459375 | 24075.1 |
| heptosyltransferase-1 | SAMN06295900_101413 | Not Available | Positive | 459600 - 460640 | 37745.5 |
| 3-deoxy-d-manno-oct-2-ulosonic acid (kdo) hydroxylase | SAMN06295900_101414 | Not Available | Positive | 460666 - 461550 | 32966.9 |
| 3-deoxy-d-manno-octulosonic-acid transferase | SAMN06295900_101415 | Not Available | Positive | 461562 - 462884 | 47388.5 |
| urease accessory protein | SAMN06295900_101416 | Not Available | Negative | 462910 - 463530 | 22054.0 |
| urease accessory protein | SAMN06295900_101417 | Not Available | Negative | 463556 - 464260 | 25081.0 |
| urease accessory protein | SAMN06295900_101418 | Not Available | Negative | 464223 - 464828 | 21501.6 |
| urease. metallo peptidase. merops family m38 | SAMN06295900_101419 | Not Available | Negative | 464828 - 466534 | 60541.5 |
| urease subunit beta | SAMN06295900_101420 | Not Available | Negative | 466601 - 466906 | 10954.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.