Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Burkholderiaceae
Genus
Trinickia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Burkholderiaceae |
| Genus | Trinickia |
| Species | Trinickia caryophylli |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Viridiplantae, Allium cepa, Dianthus caryophyllus |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1147290 bp
Thymine Count
1160892 bp
Guanine Count
2143000 bp
Cytosine Count
2092206 bp
Genome Length
6543652 bp
Protein-coding Genes
5797 genes
Non-Coding Genes
53 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| dtdp-4-dehydrorhamnose reductase | SAMN06295900_101401 | Not Available | Positive | 445422 - 446315 | 31934.9 |
| hypothetical protein | SAMN06295900_101402 | Not Available | Positive | 446555 - 447472 | 34337.4 |
| udp-glucose 4-epimerase | SAMN06295900_101403 | Not Available | Positive | 447469 - 448434 | 34734.8 |
| udp-n-acetylmuramyl pentapeptide phosphotransferase/udp-n-acetylglucosamine-1-phosphate transferase | SAMN06295900_101404 | Not Available | Positive | 448431 - 449456 | 36574.3 |
| ndp-sugar epimerase, includes udp-glcnac-inverting 4,6-dehydratase flaa1 and capsular polysaccharide biosynthesis protein epsc | SAMN06295900_101405 | Not Available | Positive | 449469 - 451352 | 69230.9 |
| udp-n-acetylmuramyl pentapeptide phosphotransferase/udp-n-acetylglucosamine-1-phosphate transferase | SAMN06295900_101406 | Not Available | Negative | 451401 - 452501 | 40316.9 |
| udp-galactose 4-epimerase | SAMN06295900_101407 | Not Available | Negative | 452580 - 453602 | 37053.9 |
| glycosyltransferase involved in cell wall bisynthesis | SAMN06295900_101408 | Not Available | Negative | 453629 - 454786 | 42778.8 |
| glycosyltransferase, gt2 family | SAMN06295900_101409 | Not Available | Negative | 454783 - 455619 | 30965.6 |
| polysaccharide transporter, pst family | SAMN06295900_101410 | Not Available | Negative | 455616 - 456920 | 47156.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.