Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Burkholderiaceae
Genus
Trinickia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Burkholderiaceae |
| Genus | Trinickia |
| Species | Trinickia caryophylli |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Viridiplantae, Allium cepa, Dianthus caryophyllus |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1147290 bp
Thymine Count
1160892 bp
Guanine Count
2143000 bp
Cytosine Count
2092206 bp
Genome Length
6543652 bp
Protein-coding Genes
5797 genes
Non-Coding Genes
53 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| uncharacterized conserved protein, circularly permuted atpgrasp superfamily | SAMN06295900_101341 | Not Available | Positive | 371355 - 372827 | 54371.1 |
| uncharacterized conserved protein, alpha-e superfamily | SAMN06295900_101342 | Not Available | Positive | 372950 - 373948 | 37390.9 |
| uncharacterized conserved protein, duf2126 family | SAMN06295900_101343 | Not Available | Positive | 373995 - 377486 | 129267.0 |
| uncharacterized conserved protein, circularly permuted atpgrasp superfamily | SAMN06295900_101344 | Not Available | Positive | 377499 - 380123 | 94659.5 |
| transglutaminase-like enzyme, putative cysteine protease | SAMN06295900_101345 | Not Available | Positive | 380120 - 381007 | 31988.7 |
| hypothetical protein | SAMN06295900_101346 | Not Available | Negative | 381015 - 381635 | 21113.7 |
| putative colanic acid biosynthesis acetyltransferase wcaf | SAMN06295900_101347 | Not Available | Positive | 381811 - 382455 | 23528.6 |
| choline dehydrogenase | SAMN06295900_101348 | Not Available | Positive | 382626 - 384332 | 62300.5 |
| glycosyltransferase involved in cell wall bisynthesis | SAMN06295900_101349 | Not Available | Negative | 384491 - 385705 | 44516.2 |
| o-antigen ligase | SAMN06295900_101350 | Not Available | Negative | 385759 - 387258 | 54592.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.