Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Burkholderiaceae
Genus
Trinickia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Burkholderiaceae |
| Genus | Trinickia |
| Species | Trinickia caryophylli |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Viridiplantae, Allium cepa, Dianthus caryophyllus |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1147290 bp
Thymine Count
1160892 bp
Guanine Count
2143000 bp
Cytosine Count
2092206 bp
Genome Length
6543652 bp
Protein-coding Genes
5797 genes
Non-Coding Genes
53 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| tyrosine-protein kinase etk/wzc | SAMN06295900_101331 | Not Available | Positive | 358964 - 361207 | 81156.6 |
| gdpmannose 4,6-dehydratase | SAMN06295900_101332 | Not Available | Positive | 361304 - 362422 | 42396.4 |
| gdp-l-fucose synthase | SAMN06295900_101333 | Not Available | Positive | 362433 - 363386 | 34848.7 |
| glycosyltransferase involved in cell wall bisynthesis | SAMN06295900_101334 | Not Available | Positive | 363395 - 364582 | 43622.4 |
| colanic acid biosynthesis glycosyl transferase wcai | SAMN06295900_101335 | Not Available | Positive | 364579 - 365880 | 46106.9 |
| atp-binding cassette, subfamily b | SAMN06295900_101336 | Not Available | Negative | 365924 - 367723 | 64672.5 |
| asparagine synthase (glutamine-hydrolysing) | SAMN06295900_101337 | Not Available | Negative | 367728 - 369674 | 71821.1 |
| transglutaminase-like superfamily protein | SAMN06295900_101338 | Not Available | Negative | 369650 - 370156 | 18597.6 |
| hypothetical protein | SAMN06295900_101339 | Not Available | Negative | 370140 - 370448 | 11244.3 |
| hypothetical protein | SAMN06295900_101340 | Not Available | Negative | 370535 - 370657 | 4214.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.