Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Burkholderiaceae
Genus
Trinickia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Burkholderiaceae |
| Genus | Trinickia |
| Species | Trinickia caryophylli |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Viridiplantae, Allium cepa, Dianthus caryophyllus |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1147290 bp
Thymine Count
1160892 bp
Guanine Count
2143000 bp
Cytosine Count
2092206 bp
Genome Length
6543652 bp
Protein-coding Genes
5797 genes
Non-Coding Genes
53 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| serine hydroxymethyltransferase | SAMN06295900_101301 | Not Available | Positive | 324485 - 325732 | 44990.9 |
| transcriptional repressor nrdr | SAMN06295900_101302 | Not Available | Positive | 325739 - 326218 | 18562.3 |
| type iv fimbrial biogenesis protein fimt | SAMN06295900_101303 | Not Available | Positive | 326389 - 326976 | 20339.6 |
| tfp pilus assembly protein pilv | SAMN06295900_101304 | Not Available | Positive | 326973 - 327386 | 13739.5 |
| type iv pilus assembly protein pilw | SAMN06295900_101305 | Not Available | Positive | 327390 - 328214 | 28917.5 |
| hypothetical protein | SAMN06295900_101306 | Not Available | Positive | 328211 - 328741 | 19380.2 |
| type iv pilus assembly protein pile | SAMN06295900_101307 | Not Available | Positive | 328798 - 329199 | 14060.9 |
| protein of unknown function | SAMN06295900_101308 | Not Available | Negative | 329323 - 329730 | 14355.3 |
| uncharacterized membrane protein yqje | SAMN06295900_101309 | Not Available | Negative | 329889 - 330392 | 18339.6 |
| membrane-anchored ribosome-binding protein, inhibits growth in stationary phase, elab/yqjd/duf883 family | SAMN06295900_101310 | Not Available | Negative | 330433 - 330708 | 9748.78 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.