Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Burkholderiaceae
Genus
Trinickia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Burkholderiaceae |
| Genus | Trinickia |
| Species | Trinickia caryophylli |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Viridiplantae, Allium cepa, Dianthus caryophyllus |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1147290 bp
Thymine Count
1160892 bp
Guanine Count
2143000 bp
Cytosine Count
2092206 bp
Genome Length
6543652 bp
Protein-coding Genes
5797 genes
Non-Coding Genes
53 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| phage integrase family protein | SAMN06295900_102188 | Not Available | Positive | 1006286 - 1007101 | 30646.9 |
| site-specific recombinase xerd | SAMN06295900_102189 | Not Available | Positive | 1007150 - 1008091 | 35663.7 |
| hypothetical protein | SAMN06295900_102190 | Not Available | Negative | 1008004 - 1008225 | 8349.94 |
| protein of unknown function | SAMN06295900_102191 | Not Available | Positive | 1008398 - 1008787 | 14490.3 |
| two-component system, ompr family, sensor histidine kinase qsec | SAMN06295900_102192 | Not Available | Negative | 1008742 - 1010157 | 50763.2 |
| dna-binding response regulator, ompr family, contains rec and winged-helix (whth) domain | SAMN06295900_102193 | Not Available | Negative | 1010154 - 1010816 | 24007.0 |
| atpase, p-type (transporting), had superfamily, subfamily ic/heavy metal translocating p-type atpase | SAMN06295900_102194 | Not Available | Positive | 1011164 - 1013470 | 80051.5 |
| 2-methylisocitrate lyase, pep mutase family | SAMN06295900_102195 | Not Available | Negative | 1013465 - 1014292 | 28567.7 |
| conserved hypothetical protein | SAMN06295900_102196 | Not Available | Negative | 1014371 - 1014757 | 14149.9 |
| phosphinothricin acetyltransferase | SAMN06295900_102197 | Not Available | Positive | 1014902 - 1015480 | 20244.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.