Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Burkholderiaceae
Genus
Trinickia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Burkholderiaceae |
| Genus | Trinickia |
| Species | Trinickia caryophylli |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Viridiplantae, Allium cepa, Dianthus caryophyllus |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1147290 bp
Thymine Count
1160892 bp
Guanine Count
2143000 bp
Cytosine Count
2092206 bp
Genome Length
6543652 bp
Protein-coding Genes
5797 genes
Non-Coding Genes
53 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| protein of unknown function | SAMN06295900_102178 | Not Available | Positive | 987400 - 987996 | 21199.8 |
| diguanylate cyclase | SAMN06295900_102179 | Not Available | Positive | 988399 - 989811 | 52043.5 |
| monoamine oxidase | SAMN06295900_102180 | Not Available | Negative | 989961 - 991397 | 52922.5 |
| predicted arabinose efflux permease, mfs family | SAMN06295900_102181 | Not Available | Negative | 991586 - 992815 | 43155.7 |
| phage integrase, n-terminal sam-like domain | SAMN06295900_102182 | Not Available | Positive | 992846 - 993676 | 30392.3 |
| hypothetical protein | SAMN06295900_102183 | Not Available | Positive | 994399 - 994971 | 21924.0 |
| regulatory p domain of the subtilisin-like proprotein convertase | SAMN06295900_102184 | Not Available | Positive | 994973 - 1001119 | 211502.0 |
| atp-binding cassette, subfamily b, hlyb/cyab | SAMN06295900_102185 | Not Available | Positive | 1001201 - 1003327 | 77547.2 |
| hemolysin d | SAMN06295900_102186 | Not Available | Positive | 1003352 - 1004767 | 52164.8 |
| outer membrane protein | SAMN06295900_102187 | Not Available | Positive | 1004757 - 1006211 | 51892.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.