Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Burkholderiaceae
Genus
Trinickia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Burkholderiaceae |
| Genus | Trinickia |
| Species | Trinickia caryophylli |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Viridiplantae, Allium cepa, Dianthus caryophyllus |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1147290 bp
Thymine Count
1160892 bp
Guanine Count
2143000 bp
Cytosine Count
2092206 bp
Genome Length
6543652 bp
Protein-coding Genes
5797 genes
Non-Coding Genes
53 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 3-hydroxy-3-methylglutaryl-coenzyme a reductase | SAMN06295900_102138 | Not Available | Negative | 937024 - 937821 | 28967.5 |
| acyl homoserine lactone synthase | SAMN06295900_102139 | Not Available | Negative | 938020 - 938628 | 22208.7 |
| protein of unknown function | SAMN06295900_102140 | Not Available | Negative | 938862 - 939308 | 16497.7 |
| luxr family transcriptional regulator, quorum-sensing system regulator solr | SAMN06295900_102141 | Not Available | Positive | 939405 - 940121 | 26513.0 |
| 3-hydroxyisobutyrate dehydrogenase | SAMN06295900_102142 | Not Available | Negative | 940201 - 941094 | 30074.3 |
| methylmalonate-semialdehyde dehydrogenase | SAMN06295900_102143 | Not Available | Negative | 941118 - 942665 | 54007.0 |
| acetyl-coa synthetase | SAMN06295900_102144 | Not Available | Negative | 942762 - 944480 | 62988.0 |
| hypothetical protein | SAMN06295900_102145 | Not Available | Negative | 944786 - 945046 | 9147.23 |
| 4-hydroxyphenylpyruvate dioxygenase | SAMN06295900_102146 | Not Available | Negative | 945223 - 947112 | 68432.7 |
| shikimate dehydrogenase | SAMN06295900_102147 | Not Available | Positive | 947377 - 948249 | 30879.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.