Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Burkholderiaceae
Genus
Trinickia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Burkholderiaceae |
| Genus | Trinickia |
| Species | Trinickia caryophylli |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Viridiplantae, Allium cepa, Dianthus caryophyllus |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1147290 bp
Thymine Count
1160892 bp
Guanine Count
2143000 bp
Cytosine Count
2092206 bp
Genome Length
6543652 bp
Protein-coding Genes
5797 genes
Non-Coding Genes
53 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| tetratricopeptide repeat-containing protein | SAMN06295900_10298 | Not Available | Positive | 897899 - 899572 | 61827.3 |
| hypothetical protein | SAMN06295900_10299 | Not Available | Positive | 899626 - 900501 | 31799.8 |
| hypothetical protein | SAMN06295900_102100 | Not Available | Negative | 900479 - 901450 | 36036.5 |
| 4-hydroxy-tetrahydrodipicolinate synthase | SAMN06295900_102101 | Not Available | Negative | 901784 - 902689 | 32701.8 |
| 4-hydroxyproline epimerase | SAMN06295900_102102 | Not Available | Positive | 902820 - 903881 | 37092.1 |
| glycine/d-amino acid oxidase | SAMN06295900_102103 | Not Available | Positive | 903878 - 905065 | 41317.5 |
| 2fe-2s iron-sulfur cluster binding domain-containing protein | SAMN06295900_102104 | Not Available | Positive | 905062 - 905334 | 9310.23 |
| nadph-dependent 2,4-dienoyl-coa reductase, sulfur reductase | SAMN06295900_102105 | Not Available | Positive | 905331 - 906653 | 45272.8 |
| transcriptional regulator, arac family | SAMN06295900_102106 | Not Available | Positive | 906685 - 907449 | 27930.9 |
| hypothetical protein | SAMN06295900_102107 | Not Available | Positive | 907749 - 909221 | 50571.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.