Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Burkholderiaceae
Genus
Trinickia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Burkholderiaceae |
| Genus | Trinickia |
| Species | Trinickia caryophylli |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Viridiplantae, Allium cepa, Dianthus caryophyllus |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1147290 bp
Thymine Count
1160892 bp
Guanine Count
2143000 bp
Cytosine Count
2092206 bp
Genome Length
6543652 bp
Protein-coding Genes
5797 genes
Non-Coding Genes
53 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| biotin carboxyl carrier protein | SAMN06295900_10159 | Not Available | Negative | 63765 - 64229 | 15924.1 |
| 3-dehydroquinate dehydratase | SAMN06295900_10160 | Not Available | Negative | 64300 - 64752 | 16646.8 |
| thiol-disulfide isomerase or thioredoxin | SAMN06295900_10161 | Not Available | Negative | 64948 - 65520 | 19774.9 |
| hypothetical protein | SAMN06295900_10162 | Not Available | Negative | 65530 - 66138 | 22257.1 |
| udp-n-acetylmuramate: l-alanyl-gamma-d-glutamyl-meso-diaminopimelate ligase | SAMN06295900_10163 | Not Available | Positive | 66188 - 67771 | 55834.9 |
| hypothetical protein | SAMN06295900_10164 | Not Available | Positive | 67768 - 68355 | 21122.3 |
| exoribonuclease-2 | SAMN06295900_10165 | Not Available | Positive | 68419 - 70638 | 79814.9 |
| shikimate dehydrogenase | SAMN06295900_10166 | Not Available | Positive | 70650 - 71525 | 30360.4 |
| monofunctional biosynthetic peptidoglycan transglycosylase | SAMN06295900_10167 | Not Available | Positive | 71522 - 72244 | 27218.5 |
| uncharacterized conserved protein, cupin superfamily | SAMN06295900_10168 | Not Available | Negative | 72366 - 72884 | 18491.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.