Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Burkholderiaceae
Genus
Trinickia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Burkholderiaceae |
| Genus | Trinickia |
| Species | Trinickia caryophylli |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Viridiplantae, Allium cepa, Dianthus caryophyllus |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1147290 bp
Thymine Count
1160892 bp
Guanine Count
2143000 bp
Cytosine Count
2092206 bp
Genome Length
6543652 bp
Protein-coding Genes
5797 genes
Non-Coding Genes
53 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| atp-dependent clp protease atp-binding subunit clpa | SAMN06295900_12051 | Not Available | Negative | 5931962 - 5934259 | 84210.1 |
| atp-dependent clp protease adaptor protein clps | SAMN06295900_12052 | Not Available | Negative | 5934256 - 5934570 | 11936.5 |
| cold-shock dna-binding protein family | SAMN06295900_12053 | Not Available | Positive | 5935135 - 5935338 | 7252.55 |
| isocitrate dehydrogenase (nadp) | SAMN06295900_12054 | Not Available | Negative | 5935666 - 5936922 | 46200.8 |
| 23s rrna pseudouridine2457 synthase | SAMN06295900_12055 | Not Available | Positive | 5937310 - 5937891 | 21291.8 |
| hypothetical protein | SAMN06295900_12056 | Not Available | Positive | 5938241 - 5938429 | 6063.23 |
| hypothetical protein | SAMN06295900_12057 | Not Available | Positive | 5938608 - 5939099 | 17536.5 |
| translation elongation factor 2 (ef-2/ef-g) | SAMN06295900_12058 | Not Available | Positive | 5939257 - 5941365 | 77714.1 |
| peptide/nickel transport system substrate-binding protein | SAMN06295900_12059 | Not Available | Positive | 5941682 - 5943358 | 60153.8 |
| peptide/nickel transport system permease protein | SAMN06295900_12060 | Not Available | Positive | 5943447 - 5944457 | 35762.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.