Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Burkholderiaceae
Genus
Trinickia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Burkholderiaceae |
| Genus | Trinickia |
| Species | Trinickia caryophylli |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Viridiplantae, Allium cepa, Dianthus caryophyllus |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1147290 bp
Thymine Count
1160892 bp
Guanine Count
2143000 bp
Cytosine Count
2092206 bp
Genome Length
6543652 bp
Protein-coding Genes
5797 genes
Non-Coding Genes
53 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| uronate dehydrogenase | SAMN06295900_12011 | Not Available | Negative | 5890336 - 5891187 | 31456.3 |
| galactarate dehydratase | SAMN06295900_12012 | Not Available | Negative | 5891189 - 5892784 | 56273.7 |
| d-glucarate dehydratase | SAMN06295900_12013 | Not Available | Negative | 5892837 - 5894177 | 48719.9 |
| d-glucarate dehydratase | SAMN06295900_12014 | Not Available | Negative | 5894218 - 5895648 | 51913.8 |
| mfs transporter, acs family, glucarate transporter | SAMN06295900_12015 | Not Available | Negative | 5895709 - 5897067 | 48503.3 |
| nadp-dependent aldehyde dehydrogenase | SAMN06295900_12016 | Not Available | Negative | 5897157 - 5898752 | 55780.9 |
| 5-dehydro-4-deoxyglucarate dehydratase | SAMN06295900_12017 | Not Available | Negative | 5898749 - 5899675 | 33316.9 |
| transcriptional regulator, lysr family | SAMN06295900_12018 | Not Available | Positive | 5899787 - 5900683 | 31973.2 |
| hypothetical protein | SAMN06295900_12019 | Not Available | Negative | 5900711 - 5901082 | 13280.8 |
| protein of unknown function | SAMN06295900_12020 | Not Available | Negative | 5901203 - 5901643 | 14975.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.