Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Burkholderiaceae
Genus
Trinickia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Burkholderiaceae |
| Genus | Trinickia |
| Species | Trinickia caryophylli |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Viridiplantae, Allium cepa, Dianthus caryophyllus |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1147290 bp
Thymine Count
1160892 bp
Guanine Count
2143000 bp
Cytosine Count
2092206 bp
Genome Length
6543652 bp
Protein-coding Genes
5797 genes
Non-Coding Genes
53 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | SAMN06295900_11981 | Not Available | Negative | 5833225 - 5833491 | 9715.34 |
| diguanylate cyclase (ggdef) domain-containing protein | SAMN06295900_11982 | Not Available | Negative | 5833676 - 5835358 | 60442.8 |
| nitt/taut family transport system permease protein | SAMN06295900_11983 | Not Available | Positive | 5835743 - 5837497 | 64785.2 |
| nitt/taut family transport system atp-binding protein | SAMN06295900_11984 | Not Available | Positive | 5837553 - 5838896 | 49309.6 |
| sigma54 specific transcriptional regulator, fis family | SAMN06295900_11985 | Not Available | Negative | 5838898 - 5839959 | 38708.2 |
| hypothetical protein | SAMN06295900_11986 | Not Available | Positive | 5840231 - 5840494 | 9147.78 |
| two component, sigma54 specific, transcriptional regulator, ntrc subfamily, fis family | SAMN06295900_11987 | Not Available | Positive | 5840583 - 5842058 | 53506.1 |
| hypothetical protein | SAMN06295900_11988 | Not Available | Positive | 5842529 - 5842738 | 7502.56 |
| trehalose 6-phosphate synthase | SAMN06295900_11989 | Not Available | Positive | 5842933 - 5844420 | 55710.8 |
| rna polymerase, sigma 54 subunit, rpon/sigl | SAMN06295900_11990 | Not Available | Negative | 5844514 - 5846010 | 55442.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.