Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Burkholderiaceae
Genus
Trinickia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Burkholderiaceae |
| Genus | Trinickia |
| Species | Trinickia caryophylli |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Viridiplantae, Allium cepa, Dianthus caryophyllus |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1147290 bp
Thymine Count
1160892 bp
Guanine Count
2143000 bp
Cytosine Count
2092206 bp
Genome Length
6543652 bp
Protein-coding Genes
5797 genes
Non-Coding Genes
53 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ketosteroid isomerase-related protein | SAMN06295900_11941 | Not Available | Negative | 5783967 - 5784437 | 18121.6 |
| argininosuccinate lyase | SAMN06295900_11942 | Not Available | Negative | 5784434 - 5785855 | 51795.2 |
| anti-sigma-k factor rska | SAMN06295900_11943 | Not Available | Negative | 5786071 - 5786901 | 29058.3 |
| rna polymerase, sigma subunit, ecf family | SAMN06295900_11944 | Not Available | Negative | 5786903 - 5787496 | 21583.0 |
| transcriptional regulator, xre family | SAMN06295900_11945 | Not Available | Negative | 5787556 - 5788389 | 30405.1 |
| methyltransferase domain-containing protein | SAMN06295900_11946 | Not Available | Positive | 5788736 - 5789494 | 27739.8 |
| eal domain, c-di-gmp-specific phosphodiesterase class i (or its enzymatically inactive variant) | SAMN06295900_11947 | Not Available | Negative | 5789609 - 5790829 | 44437.2 |
| response regulator receiver domain-containing protein | SAMN06295900_11948 | Not Available | Negative | 5790898 - 5791956 | 38605.4 |
| pas domain s-box-containing protein | SAMN06295900_11949 | Not Available | Negative | 5791953 - 5795693 | 135749.0 |
| phosphoenolpyruvate carboxylase, type 1 | SAMN06295900_11950 | Not Available | Negative | 5796039 - 5798957 | 107708.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.