Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Burkholderiaceae
Genus
Trinickia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Burkholderiaceae |
| Genus | Trinickia |
| Species | Trinickia caryophylli |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Viridiplantae, Allium cepa, Dianthus caryophyllus |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1147290 bp
Thymine Count
1160892 bp
Guanine Count
2143000 bp
Cytosine Count
2092206 bp
Genome Length
6543652 bp
Protein-coding Genes
5797 genes
Non-Coding Genes
53 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| autotransporter secretion outer membrane protein tama | SAMN06295900_11931 | Not Available | Positive | 5767770 - 5769569 | 66132.1 |
| autotransporter secretion inner membrane protein tamb | SAMN06295900_11932 | Not Available | Positive | 5769601 - 5773713 | 142786.0 |
| hypothetical protein | SAMN06295900_11933 | Not Available | Positive | 5773839 - 5774555 | 25418.4 |
| methionyl-trna synthetase | SAMN06295900_11934 | Not Available | Negative | 5774599 - 5776788 | 80036.1 |
| outer membrane protein ompa | SAMN06295900_11935 | Not Available | Negative | 5777138 - 5777803 | 22311.2 |
| atp-binding protein involved in chromosome partitioning | SAMN06295900_11936 | Not Available | Positive | 5778170 - 5779258 | 37901.9 |
| superoxide dismutase, cu-zn family | SAMN06295900_11937 | Not Available | Positive | 5779329 - 5779943 | 20736.6 |
| dctp deaminase | SAMN06295900_11938 | Not Available | Positive | 5780051 - 5780587 | 19892.5 |
| ornithine decarboxylase | SAMN06295900_11939 | Not Available | Positive | 5780699 - 5782978 | 84829.2 |
| protein of unknown function | SAMN06295900_11940 | Not Available | Positive | 5782981 - 5783796 | 28866.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.