Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Burkholderiaceae
Genus
Trinickia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Burkholderiaceae |
| Genus | Trinickia |
| Species | Trinickia caryophylli |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Viridiplantae, Allium cepa, Dianthus caryophyllus |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1147290 bp
Thymine Count
1160892 bp
Guanine Count
2143000 bp
Cytosine Count
2092206 bp
Genome Length
6543652 bp
Protein-coding Genes
5797 genes
Non-Coding Genes
53 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| upf0176 protein | SAMN06295900_11836 | Not Available | Negative | 5636016 - 5636879 | 31861.4 |
| dna polymerase iii, alpha subunit | SAMN06295900_11837 | Not Available | Positive | 5637052 - 5640642 | 132384.0 |
| glycosyltransferase involved in cell wall bisynthesis | SAMN06295900_11838 | Not Available | Positive | 5640683 - 5641804 | 40855.5 |
| heptosyltransferase-1 | SAMN06295900_11839 | Not Available | Positive | 5641941 - 5642942 | 35883.4 |
| adp-heptose:lps heptosyltransferase | SAMN06295900_11840 | Not Available | Positive | 5643188 - 5644315 | 40896.6 |
| o-antigen ligase | SAMN06295900_11841 | Not Available | Positive | 5644312 - 5645598 | 46393.5 |
| glycosyltransferase involved in cell wall bisynthesis | SAMN06295900_11842 | Not Available | Positive | 5645655 - 5646887 | 45282.9 |
| heptosyltransferase-3 | SAMN06295900_11843 | Not Available | Positive | 5646934 - 5648151 | 43863.9 |
| glycosyltransferase involved in cell wall bisynthesis | SAMN06295900_11844 | Not Available | Negative | 5648111 - 5648899 | 28830.3 |
| atp-binding cassette, subfamily b, msba | SAMN06295900_11845 | Not Available | Positive | 5649124 - 5650905 | 64857.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.