Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Burkholderiaceae
Genus
Trinickia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Burkholderiaceae |
| Genus | Trinickia |
| Species | Trinickia caryophylli |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Viridiplantae, Allium cepa, Dianthus caryophyllus |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1147290 bp
Thymine Count
1160892 bp
Guanine Count
2143000 bp
Cytosine Count
2092206 bp
Genome Length
6543652 bp
Protein-coding Genes
5797 genes
Non-Coding Genes
53 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| poly(3-hydroxybutyrate) depolymerase | SAMN06295900_11826 | Not Available | Negative | 5622365 - 5623642 | 48504.6 |
| glucoamylase (glucan-1,4-alpha-glucosidase), gh15 family | SAMN06295900_11827 | Not Available | Negative | 5623919 - 5625769 | 68887.2 |
| hypothetical protein | SAMN06295900_11828 | Not Available | Positive | 5625964 - 5626209 | 8756.55 |
| protein of unknown function | SAMN06295900_11829 | Not Available | Negative | 5626235 - 5626393 | 5489.27 |
| 6-phosphogluconolactonase | SAMN06295900_11830 | Not Available | Positive | 5626481 - 5627734 | 44076.2 |
| dna segregation atpase ftsk/spoiiie, s-dna-t family | SAMN06295900_11831 | Not Available | Negative | 5628025 - 5631261 | 111776.0 |
| meta domain-containing protein | SAMN06295900_11832 | Not Available | Negative | 5631352 - 5631891 | 18917.4 |
| formate-dependent phosphoribosylglycinamide formyltransferase | SAMN06295900_11833 | Not Available | Positive | 5632021 - 5633235 | 43092.0 |
| superfamily ii dna and rna helicase | SAMN06295900_11834 | Not Available | Positive | 5633556 - 5635001 | 52470.9 |
| glutamyl-q trna(asp) synthetase | SAMN06295900_11835 | Not Available | Negative | 5635060 - 5636004 | 33726.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.