Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Burkholderiaceae
Genus
Trinickia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Burkholderiaceae |
| Genus | Trinickia |
| Species | Trinickia caryophylli |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Viridiplantae, Allium cepa, Dianthus caryophyllus |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1147290 bp
Thymine Count
1160892 bp
Guanine Count
2143000 bp
Cytosine Count
2092206 bp
Genome Length
6543652 bp
Protein-coding Genes
5797 genes
Non-Coding Genes
53 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hu family dna-binding protein | SAMN06295900_117124 | Not Available | Positive | 5594565 - 5594843 | 9607.59 |
| gtpase, g3e family | SAMN06295900_117125 | Not Available | Negative | 5594961 - 5596271 | 48111.1 |
| transglycosylase slt domain-containing protein | SAMN06295900_117126 | Not Available | Negative | 5596392 - 5596838 | 16689.9 |
| type ii secretion system protein d (gspd) | SAMN06295900_117127 | Not Available | Positive | 5597338 - 5599674 | 81121.0 |
| type ii secretion system (t2ss), protein e, n-terminal domain | SAMN06295900_117128 | Not Available | Positive | 5599671 - 5600059 | 13736.9 |
| hypothetical protein | SAMN06295900_1181 | Not Available | Negative | 5600375 - 5600905 | 19129.9 |
| phosphonoacetate hydrolase | SAMN06295900_1182 | Not Available | Positive | 5600935 - 5601276 | 12166.5 |
| hypothetical protein | SAMN06295900_1183 | Not Available | Positive | 5601452 - 5601622 | 6069.77 |
| hypothetical protein | SAMN06295900_1184 | Not Available | Positive | 5601673 - 5602200 | 19145.3 |
| hypothetical protein | SAMN06295900_1185 | Not Available | Positive | 5602313 - 5602597 | 10383.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.