Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Burkholderiaceae
Genus
Trinickia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Burkholderiaceae |
| Genus | Trinickia |
| Species | Trinickia caryophylli |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Viridiplantae, Allium cepa, Dianthus caryophyllus |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1147290 bp
Thymine Count
1160892 bp
Guanine Count
2143000 bp
Cytosine Count
2092206 bp
Genome Length
6543652 bp
Protein-coding Genes
5797 genes
Non-Coding Genes
53 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | SAMN06295900_11734 | Not Available | Positive | 5482009 - 5482680 | 23310.0 |
| dihydroxy-acid dehydratase | SAMN06295900_11735 | Not Available | Negative | 5482907 - 5484757 | 65002.0 |
| transcriptional regulator, tetr family | SAMN06295900_11736 | Not Available | Negative | 5484946 - 5485611 | 23931.6 |
| efflux transporter, outer membrane factor (omf) lipoprotein, nodt family | SAMN06295900_11737 | Not Available | Positive | 5485791 - 5487251 | 51066.0 |
| membrane fusion protein, multidrug efflux system | SAMN06295900_11738 | Not Available | Positive | 5487272 - 5488459 | 41574.1 |
| mfs transporter, dha2 family, multidrug resistance protein | SAMN06295900_11739 | Not Available | Positive | 5488477 - 5490009 | 54585.4 |
| predicted purr-regulated permease perm | SAMN06295900_11740 | Not Available | Positive | 5490042 - 5491100 | 36762.7 |
| zn-binding pro-ala-ala-arg (paar) domain-containing protein, incolved in typevi secretion | SAMN06295900_11741 | Not Available | Negative | 5491209 - 5491496 | 9999.81 |
| hypothetical protein | SAMN06295900_11742 | Not Available | Negative | 5491508 - 5492539 | 37968.5 |
| hypothetical protein | SAMN06295900_11743 | Not Available | Negative | 5492533 - 5494482 | 70993.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.