Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Burkholderiaceae
Genus
Trinickia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Burkholderiaceae |
| Genus | Trinickia |
| Species | Trinickia caryophylli |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Viridiplantae, Allium cepa, Dianthus caryophyllus |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1147290 bp
Thymine Count
1160892 bp
Guanine Count
2143000 bp
Cytosine Count
2092206 bp
Genome Length
6543652 bp
Protein-coding Genes
5797 genes
Non-Coding Genes
53 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| isoquinoline 1-oxidoreductase, beta subunit | SAMN06295900_11663 | Not Available | Positive | 5336299 - 5338500 | 77387.5 |
| two component heavy metal response transcriptional regulator, winged helix family | SAMN06295900_11664 | Not Available | Positive | 5338596 - 5339273 | 25381.8 |
| heavy metal sensor signal transduction histidine kinase | SAMN06295900_11665 | Not Available | Positive | 5339273 - 5340715 | 52147.8 |
| hypothetical protein | SAMN06295900_11666 | Not Available | Positive | 5341243 - 5341599 | 13516.0 |
| muramoyltetrapeptide carboxypeptidase | SAMN06295900_11667 | Not Available | Positive | 5341660 - 5342529 | 31079.3 |
| efflux transporter, outer membrane factor (omf) lipoprotein, nodt family | SAMN06295900_11668 | Not Available | Negative | 5342729 - 5344168 | 51420.3 |
| rnd family efflux transporter, mfp subunit | SAMN06295900_11669 | Not Available | Negative | 5344191 - 5345387 | 41518.2 |
| multidrug efflux pump subunit acrb | SAMN06295900_11670 | Not Available | Negative | 5345472 - 5348657 | 112512.0 |
| protein of unknown function | SAMN06295900_11671 | Not Available | Positive | 5348985 - 5349305 | 10684.5 |
| protein of unknown function | SAMN06295900_11672 | Not Available | Negative | 5349379 - 5350626 | 47061.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.