Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Burkholderiaceae
Genus
Trinickia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Burkholderiaceae |
| Genus | Trinickia |
| Species | Trinickia caryophylli |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Viridiplantae, Allium cepa, Dianthus caryophyllus |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1147290 bp
Thymine Count
1160892 bp
Guanine Count
2143000 bp
Cytosine Count
2092206 bp
Genome Length
6543652 bp
Protein-coding Genes
5797 genes
Non-Coding Genes
53 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| malate dehydrogenase (oxaloacetate-decarboxylating) | SAMN06295900_11653 | Not Available | Negative | 5323083 - 5324246 | 40605.4 |
| biotin carboxylase | SAMN06295900_11654 | Not Available | Negative | 5324326 - 5325636 | 48028.4 |
| uncharacterized conserved protein, nad-dependent epimerase/dehydratase family | SAMN06295900_11655 | Not Available | Negative | 5325633 - 5328002 | 85856.6 |
| ectoine hydroxylase-related dioxygenase, phytanoyl-coa dioxygenase (phyh) family | SAMN06295900_11656 | Not Available | Negative | 5328013 - 5328918 | 33347.3 |
| regulatory protein, luxr family | SAMN06295900_11657 | Not Available | Negative | 5329134 - 5329538 | 15016.1 |
| 3-phosphoshikimate 1-carboxyvinyltransferase | SAMN06295900_11658 | Not Available | Negative | 5329604 - 5330950 | 48610.4 |
| hypothetical protein | SAMN06295900_11659 | Not Available | Negative | 5331031 - 5331783 | 29441.2 |
| dde superfamily endonuclease | SAMN06295900_11660 | Not Available | Positive | 5332019 - 5332456 | 16632.6 |
| quinoprotein glucose dehydrogenase | SAMN06295900_11661 | Not Available | Positive | 5332547 - 5335432 | 99727.9 |
| isoquinoline 1-oxidoreductase, alpha subunit | SAMN06295900_11662 | Not Available | Positive | 5335834 - 5336295 | 16006.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.