Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Burkholderiaceae
Genus
Trinickia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Burkholderiaceae |
| Genus | Trinickia |
| Species | Trinickia caryophylli |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Viridiplantae, Allium cepa, Dianthus caryophyllus |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1147290 bp
Thymine Count
1160892 bp
Guanine Count
2143000 bp
Cytosine Count
2092206 bp
Genome Length
6543652 bp
Protein-coding Genes
5797 genes
Non-Coding Genes
53 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| non-haem fe2+, alpha-ketoglutarate-dependent halogenase | SAMN06295900_11622 | Not Available | Negative | 5285043 - 5285990 | 36112.6 |
| hypothetical protein | SAMN06295900_11623 | Not Available | Positive | 5287098 - 5289032 | 68327.0 |
| dna repair exonuclease sbccd nuclease subunit | SAMN06295900_11624 | Not Available | Positive | 5289190 - 5290308 | 40132.4 |
| dna repair exonuclease sbccd atpase subunit | SAMN06295900_11625 | Not Available | Positive | 5290305 - 5292929 | 95449.0 |
| predicted dna-binding transcriptional regulator yafy, contains an hth and wyl domains | SAMN06295900_11626 | Not Available | Negative | 5293010 - 5294065 | 39743.7 |
| hypothetical protein | SAMN06295900_11627 | Not Available | Positive | 5294370 - 5294993 | 22036.2 |
| hypothetical protein | SAMN06295900_11628 | Not Available | Negative | 5295121 - 5296059 | 33150.3 |
| dna-n1-methyladenine dioxygenase | SAMN06295900_11629 | Not Available | Positive | 5296597 - 5297202 | 22420.6 |
| protein of unknown function | SAMN06295900_11630 | Not Available | Negative | 5297544 - 5297903 | 13258.6 |
| fucose 4-o-acetylase | SAMN06295900_11631 | Not Available | Positive | 5298178 - 5299272 | 40174.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.