Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Burkholderiaceae
Genus
Trinickia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Burkholderiaceae |
| Genus | Trinickia |
| Species | Trinickia caryophylli |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Viridiplantae, Allium cepa, Dianthus caryophyllus |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1147290 bp
Thymine Count
1160892 bp
Guanine Count
2143000 bp
Cytosine Count
2092206 bp
Genome Length
6543652 bp
Protein-coding Genes
5797 genes
Non-Coding Genes
53 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| sodium/proton antiporter, cpa1 family | SAMN06295900_115117 | Not Available | Positive | 5227397 - 5228731 | 47345.9 |
| hypothetical protein | SAMN06295900_115118 | Not Available | Negative | 5228842 - 5229366 | 19643.5 |
| response regulator receiver domain-containing protein | SAMN06295900_115119 | Not Available | Negative | 5229543 - 5230001 | 16730.9 |
| outer membrane scaffolding protein for murein synthesis, mipa/ompv family | SAMN06295900_115120 | Not Available | Positive | 5230167 - 5231030 | 31345.2 |
| cbs domain-containing protein | SAMN06295900_115121 | Not Available | Negative | 5231062 - 5231529 | 16424.7 |
| efflux transporter, outer membrane factor (omf) lipoprotein, nodt family | SAMN06295900_115122 | Not Available | Negative | 5231597 - 5233099 | 53229.2 |
| abc-2 type transport system permease protein | SAMN06295900_115123 | Not Available | Negative | 5233108 - 5234250 | 41775.1 |
| abc-2 type transport system atp-binding protein | SAMN06295900_115124 | Not Available | Negative | 5234247 - 5235203 | 34945.8 |
| hlyd family secretion protein | SAMN06295900_115125 | Not Available | Negative | 5235200 - 5236165 | 33912.4 |
| transcriptional regulator, tetr family | SAMN06295900_115126 | Not Available | Negative | 5236162 - 5236890 | 26697.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.